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<h1 class="top">The systems biology markup language (SBML):<br>
<small>a
medium for representation and exchange of<br>
biochemical network models</small></h1>
<p class="header">This page contains the abstract of the following article:
M. Hucka, A. Finney, H. M. Sauro, H. Bolouri,
J. C. Doyle, H. Kitano, P. Arkin, B. J. Bornstein, D. Bray,
A. Cornish-Bowden, A. A. Cuellar, S. Dronov, E. D. Gilles,
M. Ginkel, V. Gor, I. I. Goryanin, W. J. Hedley,
T. C. Hodgman, J.-H. Hofmeyr, P. J. Hunter, N. S. Juty,
J. L. Kasberger, A. Kremling, U. Kummer, N. Le Novère,
L. M. Loew, D. Lucio, P. Mendes, E. Minch,
E. D. Mjolsness, Y. Nakayama, M. R. Nelson, P. F. Nielsen,
T. Sakurada, J. C. Schaff, B. E. Shapiro, T. S. Shimizu,
H. D. Spence, J. Stelling, K. Takahashi, M. Tomita,
J. Wagner and J. Wang
(2003) <q>The systems biology markup language (SBML): a
medium for representation and exchange of
biochemical network models</q>,
<cite>Bioinformatics</cite>
<strong>19,</strong> 524–531
A <a href="hucka.pdf"><abbr title="Portable data format (Acrobat)">PDF</abbr></a> version
of the complete article is also available.</p>
<p><strong>Motivation:</strong> Molecular biotechnology now makes it possible
to build elaborate systems models, but the systems
biology community needs information standards if models
are to be shared, evaluated and developed cooperatively.
<p><strong>Results:</strong> We summarize the Systems Biology Markup
Language (SBML) Level 1, a free, open, XML-based
format for representing biochemical reaction networks.
SBML is a software-independent language for describing
models common to research in many areas of computational
biology, including cell signaling pathways, metabolic
pathways, gene regulation, and others.
<p><strong>Availability:</strong> The specification of SBML Level 1 is freely
available from <a href="http://sbml.org/index.psp">http://sbml.org/index.psp</a>.
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Page created on 9 July 2003<br>
Last update: 22 December 2008<br>
Last significant update: 28 October 2008<br>
<em>Comments to <a href="mailto:acornish@ifr88.cnrs-mrs.fr">Athel Cornish-Bowden</a></em><br>
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